Last updated: 2020-03-23

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Knit directory: 10x-adipocyte-analysis/

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Preadipocytes analysis (10x-180504 data):
  1. Before QC
  2. General analysis
  3. Alignment
  4. Monocle analysis
  5. Velocyto analysis
  6. Scmap analysis
  7. Mixture cluster
Adipocyte timeseries analysis (10x-180831 analysis):
  1. First data inspection
  2. Demuxlet results
  3. General analysis
  4. Monocle feature selection
  5. Monocle analysis
  6. Monocle genes over pseudotime
  7. BEAM GO plots
  8. Velocyto analysis
  9. TF analysis
  10. Metabolic and ECM genes
  11. Supplementary figures
Wolfrum analysis:
  1. General analyses
  2. Branch marker genes
  3. Seurat and Harmony integration
Vijay analysis:
  1. General analyses
  2. Branch marker genes